Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Res. 2008 Jan;36(Database issue):D491-6. Epub 2007 Oct 25. PMID: 17962297 link
Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biol. 2007;8(6):R109. PMID: 17567924 link
Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biol. 2007;8(6):R109. PMID: 17567924 link
Marcet-Houben M, Gabaldón T. The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome. PLoS ONE. 2009;4(2):e4357. Epub 2009 Feb 3. PMID: 19190756
Jaime Huerta-Cepas, Marina Marcet-Houben, Miguel Pignatelli, Andrés Moya and Toni Gabaldón. The pea aphid phylome: a complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes. Insect Molecular Biology. 2009. (In Press)
Peña A., Keeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverría J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbé V., Dopazo J., Rosselló-Móra R., Schüler M., Glöckner FO., Amann R., Gabaldón T., Antón J. Fine-scale evolution:genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. ISME J. 2010 Feb 18