It's time for a change!

 

We are working hard to bring a new version of PhylomeDB. Do you want to try and send us your feedback?

 


 

Welcome to PhylomeDB 4!

PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes, including Maximum Likelihood tree inference, alignment trimming and evolutionary model testing.

PhylomeDB includes also a public download section with the complete set of trees, alignments and orthology predictions, as well as a web API that faciliates cross linking trees from external sources. Finally, phylomeDB provides an advanced tree visualization interface based on the ETE toolkit, which integrates tree topologies, taxonomic information, domain mapping and alignment visualization in a single and interactive tree image. 

 

What's new in phylomeDB 4?

 

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protests_Irak_war_2003_Madrid_by_Bernardo_PerezWe live in a world populated by several billions of human beings, all of them tangled in a complex society, a sort of human ecosystem that sets the landscape of the life of every individual person. Society is not, and probably...

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