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Welcome to PhylomeDB 5!

Your catalog of gene phylogenies

Show Latest Phylomes

PhylomeDB uses

O. europaea phylome

Lynx pardinus phylome

Cinara cedri phylome

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What is phylomeDB?

PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes, including Maximum Likelihood tree inference, alignment trimming and evolutionary model testing.

PhylomeDB includes also a public download section with the complete set of trees, alignments and orthology predictions. Finally, phylomeDB provides an advanced tree visualization interface based on the ETE toolkit, which integrates tree topologies, taxonomic information, domain mapping and alignment visualization in a single and interactive tree image. 

Phylogenetic trees representing the evolutionary relationships of homologous genes are the entry point for many evolutionary analyses



News

Scientists conduct first analysis of the evolution of genetic changes and their relationship with the development of animal diversity
02/04/2020 - 17:15

The study infers the genetic changes that coincided with the appearance of different groups of animals and their main traits.
Researchers at IRB Barcelona and BSC-CNS have confirmed that the dynamics of genomic evolution, in addition to the presence or absence of the genes themselves, determines diversity in the animal kingdom.
Published in Nature Ecology and Evolution, the study has been based for the first time on the genomic data of all the large groups of animals.
More information

Tree of the month: Dyctiostelium discoideum Pianissimo and cell migration
07/02/2018 - 12:19

Tree of the month: Dyctiostelium discoideum Pianissimo and cell migration

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