Welcome to PhylomeDB 4!

PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes, including Maximum Likelihood tree inference, alignment trimming and evolutionary model testing.

PhylomeDB includes also a public download section with the complete set of trees, alignments and orthology predictions, as well as a web API that faciliates cross linking trees from external sources. Finally, phylomeDB provides an advanced tree visualization interface based on the ETE toolkit, which integrates tree topologies, taxonomic information, domain mapping and alignment visualization in a single and interactive tree image. 

What's new in phylomeDB 4?

 

Latest story

April 15, 2015 - 12:18

The Brewer, designed and engraved in the Sixteenth Century, by J. Amman.When we think about domestication, the first thing it comes to our mind is the image of beloved pets or farm animals. Some may even think about the species of plants humanity has harvested since long ago. There is, however, a humble fungus whose shared history with humanity...

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