How to cite PhylomeDB

Database:

• Fuentes D, Molina M, Chorostecki U, Capella-Gutiérrez S, Marcet-Houben M, Gabaldón T. PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogeniesNucleic Acids Res. 2021 Oct 30:gkab966. doi: 10.1093/nar/gkab966. PMID: 34718760 [Link]

• Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T. PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Res. 2014, 42(Database issue), D897-902. PMID: 24275491 [Link]

• Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. Nucleic Acids Res. 2011, 39(Database issue), D556–60. PMID: 21075798 [Link]

• Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Res. 2008, 36(Database issue):D491-6. PMID: 17962297 [Link]

The original phylogenetic pipeline used to reconstruct phylomes is described in:

• Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biol. 2007;8(6):R109. PMID: 17567924 link

Specific phylome releases and datasets:

Please, check for associated publications of each phylome

PhylomeDB team

People involved in the design, development and maintenance of PhylomeDB are:

• Diego Fuentes
• Daniel Majer
• Marina Marcet-Houben
• Toni Gabaldón

(Past members and contributors)

• Salvador Capella-Gutierrez
• Leszek Pryszcz
• Miguel Ángel Naranjo
• Ernst Thür
• Laia Carreté
• Jaime Huerta-Cepas
• Ivan Denisov
• Diego Kormes
• Anibal Bueno-Amorós
• Manu Molina
• Uciel Chorostecki
• Ismal Collado

PhylomeDB uses

PhylomeDB cross linking